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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24028312_24028401_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24028312 - 24028401
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTAAATTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTGCTTAAAT
Flanking Amino Acid:
ITTKPTPHLDGHHVVFGQVI
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
85.3
32.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
75.7
0.58
1
66.4
44.5
Minor 5ss
39.9
-1.1
2.8
46.6
41.8
Minor BPS
74.8
0.86
1.8
93.4
34.6

Associated Gene:

Gene:
PPIG
Ensembl Gene ID:
ENSAPLG00000006370
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006653
24015016 - 24041356
26341