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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24050352_24051379_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
24050352 - 24051379
Intron Length:
1028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CTTTCTGAGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTCTGAGCC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.4
0.39
1.1
61.8
43.6
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
59
0.26
1.7
70.77
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020418
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017849
24049471 - 24054640
5170