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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24060815_24061157_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24060815 - 24061157
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTACAAT
U12 Branch Point Sequence:
TATGTTACAATA
Flanking Amino Acid:
LMKEKEAEMRRLTQERQDKI
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
65.2
0.38
1.3
73.4
38.5
Major PPT
79.7
0.67
0.9
73.5
37
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
45.2
-0.3
1.8
56.88
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006323
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006559
24056410 - 24064521
8112