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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24062905_24062997_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24062905 - 24062997
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTTTGTTGA
5'SS Class:
weak_major
3'SS Sequence:
TGTTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTAATTGAAAT
Flanking Amino Acid:
YQNERVKGLHSALLLTEVLK
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.3
61.8
39.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.1
0.79
0.7
81.1
30.9
Minor 5ss
44.4
-0.6
2.5
54.8
42.8
Minor BPS
49.3
0.03
1.7
70.87
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006323
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006559
24056410 - 24064521
8112