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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24075702_24077028_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24075702 - 24077028
Intron Length:
1327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTTCCAAGACA
Flanking Amino Acid:
LESKICQQIEYYFGNHNLPR
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
95.2
1.02
0.5
91.6
19.5
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
56
0.18
2
73.9
37.5

Associated Gene:

Gene:
SSB
Ensembl Gene ID:
ENSAPLG00000006109
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006362
24075636 - 24080724
5089