About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24077133_24077298_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24077133 - 24077298
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTACTCAATA
Flanking Amino Acid:
VPLEVMIKFNRLSRLSKDFG
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71
0.47
0.9
66.8
33.9
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
61
0.34
1.8
72.62
39.5

Associated Gene:

Gene:
SSB
Ensembl Gene ID:
ENSAPLG00000006109
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006362
24075636 - 24080724
5089