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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24077474_24077639_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24077474 - 24077639
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGCTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TCATATATAATT
Flanking Amino Acid:
AAIKNRSVYVKGFPVDATLD
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
79
0.72
1
78.4
31.2
Major PPT
79.3
0.66
0.9
72.9
37.4
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
51.9
0.14
1.8
70.52
40.6

Associated Gene:

Gene:
SSB
Ensembl Gene ID:
ENSAPLG00000006109
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006362
24075636 - 24080724
5089