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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24079983_24080626_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24079983 - 24080626
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCAATCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTACCGTAAAT
Flanking Amino Acid:
EEEGEDDTKTEPASPKKRPL
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
79.7
0.67
0.9
73.2
36.7
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
62
0.46
2.2
86.29
39.3

Associated Gene:

Gene:
SSB
Ensembl Gene ID:
ENSAPLG00000006109
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006362
24075636 - 24080724
5089