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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24080840_24081279_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24080840 - 24081279
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTAACCCAACA
Flanking Amino Acid:
ASYKFHKKKSVDIEVDFIRF
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
87.5
28.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.3
0.75
0.8
77.5
29.5
Minor 5ss
39.8
-1.1
2.8
52.2
44.4
Minor BPS
46.6
-0.2
2
63.86
41.3

Associated Gene:

Gene:
METTL5
Ensembl Gene ID:
ENSAPLG00000005961
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006189
24080792 - 24084031
3240