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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24081330_24081864_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24081330 - 24081864
Intron Length:
535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
GTACTATTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATAGCATAACA
Flanking Amino Acid:
EWEVKMEVIAELRYDLPASY
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
80
0.75
1
78.6
31
Major PPT
67.7
0.4
0.9
61.7
38.8
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
53
0.09
2.1
70.72
40.8

Associated Gene:

Gene:
METTL5
Ensembl Gene ID:
ENSAPLG00000005961
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006189
24080792 - 24084031
3240