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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24081917_24082205_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24081917 - 24082205
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATCTGTTTAATA
Flanking Amino Acid:
YSLHKTSTRQHIQKKADEWE
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.6
0.53
0.9
67.8
38.4
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
60.9
0.34
1.7
68.85
38.5

Associated Gene:

Gene:
METTL5
Ensembl Gene ID:
ENSAPLG00000005961
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006189
24080792 - 24084031
3240