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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24131589_24131808_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24131589 - 24131808
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTCAATCTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTCCTCAATC
Flanking Amino Acid:
TSSDGLASSQCSRRKSLQRE
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
67
0.38
1
58.7
41.5
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
72.5
0.69
1.5
78.64
37.2

Associated Gene:

Gene:
UBR3
Ensembl Gene ID:
ENSAPLG00000005734
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025218
24085452 - 24187524
102073