About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24131589_24133252_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24131589 - 24133252
Intron Length:
1664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTATTTTGAAAG
Flanking Amino Acid:
TSSDGLASSQNSGTAQVFSL
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76.1
0.59
1
75.7
37.9
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
49.6
-0.1
1.6
54.95
39.8

Associated Gene:

Gene:
UBR3
Ensembl Gene ID:
ENSAPLG00000005734
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005959
24085452 - 24187249
101798