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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24148736_24154262_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24148736 - 24154262
Intron Length:
5527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCCATTCAAAA
Flanking Amino Acid:
NDFLFMYSVARTNLELELVH
Intron Amino Acid Position:
1431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
100
1.24
0.5
100
0
Major PPT
82.7
0.74
0.9
78
35.5
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
47
-0.2
1.8
59.5
39.9

Associated Gene:

Gene:
UBR3
Ensembl Gene ID:
ENSAPLG00000005734
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005959
24085452 - 24187249
101798
ENSAPLT00000025218
24085452 - 24187524
102073