About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24202098_24202305_F

Intron Information:

Intron Rank:
145901
Intron Class:
major
Intron Phase:
Intron Coordinates:
24202098 - 24202305
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
AAGCTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
74.2
0.6
1
67
39.4
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
48.4
-0
1.5
59.95
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028613
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022841
24198526 - 24203173
4648