About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24224159_24226446_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24224159 - 24226446
Intron Length:
2288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
CCCCCCTTCACA
Flanking Amino Acid:
VGGQLWLVLELCNGGSVTEL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
73.2
0.52
0.8
66.7
26.4
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
54.1
0.12
1.8
60.03
46

Associated Gene:

Gene:
MYO3B
Ensembl Gene ID:
ENSAPLG00000005409
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005580
24222363 - 24394079
171717