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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24226552_24226813_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24226552 - 24226813
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGGCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
ATTTCTGTTACT
Flanking Amino Acid:
ISYILYGALLGLQHLHNNRI
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
61.5
0.26
1
54.2
40.7
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
55.5
0.25
2.3
82.01
39.5

Associated Gene:

Gene:
MYO3B
Ensembl Gene ID:
ENSAPLG00000005409
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005580
24222363 - 24394079
171717