About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24294158_24295225_F


Intron Information:

Intron Rank:
12

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
24294158 - 24295225

Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATTTCTA

5'SS Class:
major

3'SS Sequence:
GTGTTCTGTGAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
TGTTCTGTGAAG

Flanking Amino Acid:
IVQHLTFLGKANNRALREKI

Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.9
0.66
1
72.5
38.4

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
63.1
0.3
1.2
64
41.9

Minor 5ss
44
-0.7
2.8
59
45.4

Minor BPS
47.8
-0.3
2.2
60.07
42

Associated Gene:

Gene:
MYO3B

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

24222363 - 24394079
171717