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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24296620_24297009_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24296620 - 24297009
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
GTCATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATTCCTTTAAAA
Flanking Amino Acid:
CFRIIGFTDEEVYSVYRILT
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.8
0.72
0.9
75.6
38.2
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
70.6
0.64
1.3
76.83
33.2

Associated Gene:

Gene:
MYO3B
Ensembl Gene ID:
ENSAPLG00000005409
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005580
24222363 - 24394079
171717