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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24297488_24298743_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24297488 - 24298743
Intron Length:
1256

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACATGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCATGCTGAATT
Flanking Amino Acid:
NTLLQPDKNICNAENGMNVG
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
72.4
41.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.3
0.68
0.9
75.1
33.8
Minor 5ss
30.3
-2.3
3.9
40.3
40.2
Minor BPS
49.7
0.06
1.9
65.17
45.6

Associated Gene:

Gene:
MYO3B
Ensembl Gene ID:
ENSAPLG00000005409
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005580
24222363 - 24394079
171717