About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24299290_24301208_F


Intron Information:

Intron Rank:
19

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
24299290 - 24301208

Intron Length:
1919

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TTG|GTATGAGCA

5'SS Class:
major

3'SS Sequence:
CTCAAATGTTTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTTTATCAATG

Flanking Amino Acid:
FPQATDLTLVDKFEDNLRCK

Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.7
0.58
1
63.2
35

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
61.7
0.26
1
58.4
41.8

Minor 5ss
36.9
-1.5
3.3
44.8
45.1

Minor BPS
56.5
0.07
1.9
68.48
39.3

Associated Gene:

Gene:
MYO3B

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

24222363 - 24394079
171717