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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24317841_24322112_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24317841 - 24322112
Intron Length:
4272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTTTCTGGAACA
Flanking Amino Acid:
PSQLSAGRIKVDTMEVMRHP
Intron Amino Acid Position:
898

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
33.8
-1.8
2.6
43.7
43.3
Minor BPS
54.6
0.14
2.1
72.92
38.9

Associated Gene:

Gene:
MYO3B
Ensembl Gene ID:
ENSAPLG00000005409
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005580
24222363 - 24394079
171717