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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24335645_24383993_F

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
24335645 - 24383993
Intron Length:
48349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
GATTTATTTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
ATGGATTTATTT
Flanking Amino Acid:
RTDAAIHIQAVSFFPGCLNA
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
59.4
0.21
1.7
70.3
44.5
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
46.9
-0.1
1.8
62.52
42.4

Associated Gene:

Gene:
MYO3B
Ensembl Gene ID:
ENSAPLG00000005409
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005580
24222363 - 24394079
171717