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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24392633_24393943_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24392633 - 24393943
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATATC
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CATTTTTTAACT
Flanking Amino Acid:
QGSKRKPRKLGQIKVLDGED
Intron Amino Acid Position:
1224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.6
35.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.4
0.62
1
75.7
38.5
Minor 5ss
39.2
-1.2
2.9
46
42.5
Minor BPS
76.9
0.92
1.1
84.25
36.7

Associated Gene:

Gene:
MYO3B
Ensembl Gene ID:
ENSAPLG00000005409
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005580
24222363 - 24394079
171717