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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24400350_24401718_F

Intron Information:

Intron Rank:
138527
Intron Class:
major
Intron Phase:
Intron Coordinates:
24400350 - 24401718
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TATTCTTCATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
65.7
40
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
75
0.56
0.9
70.7
34
Minor 5ss
28.7
-2.4
3.5
34.2
43.1
Minor BPS
52.4
0.15
1.9
74.9
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024599
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032901
24399881 - 24402720
2840