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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_2440366_2442357_R

Intron Information:

Intron Rank:
148169
Intron Class:
major
Intron Phase:
Intron Coordinates:
2440366 - 2442357
Intron Length:
1992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGTTA
5'SS Class:
major
3'SS Sequence:
CCTTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
GGAATCTGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.8
36.2
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
85.6
0.8
0.8
83.6
31.4
Minor 5ss
33.5
-1.9
3.6
45.7
49.5
Minor BPS
56.1
0.27
1.5
68.45
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027029
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031207
2439794 - 2443254
3461