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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24451429_24452686_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24451429 - 24452686
Intron Length:
1258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GGCTACTAAAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
82.1
37.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
88.7
0.87
0.7
81
31
Minor 5ss
40.6
-1
3.1
60.2
44.1
Minor BPS
45
-0.5
2
47.3
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023732
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020248
24450548 - 24455522
4975