About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24459473_24460323_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24459473 - 24460323
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AATTGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CCACTCTCAATT
Flanking Amino Acid:
RDTLKYGVRTGHPRFFNQLS
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
33.4
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
78.5
0.64
0.9
74.3
40.5
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
50.1
0.08
1.6
61.82
42.5

Associated Gene:

Gene:
GAD1
Ensembl Gene ID:
ENSAPLG00000005082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005303
24458368 - 24476445
18078