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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24466515_24466608_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24466515 - 24466608
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGCTCA
5'SS Class:
major
3'SS Sequence:
TGGTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACTCCATTAAAT
Flanking Amino Acid:
PKLVLFTSEHSHYSIKKAGA
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
66.7
35
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
80.7
0.69
0.9
77.9
36.6
Minor 5ss
41.1
-1
3
52.4
44.6
Minor BPS
59
0.36
1.7
74.89
41

Associated Gene:

Gene:
GAD1
Ensembl Gene ID:
ENSAPLG00000005082
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005303
24458368 - 24476445
18078