Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24466948_24468063_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24466948 - 24468063

Intron Length:

1116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGCGTT

5'SS Class:

major

3'SS Sequence:

ATTTTTATTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATATTTAATG

Flanking Amino Acid:

EAKILEAKQKGYIPLFVNAT

Intron Amino Acid Position:

304

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.2

40.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

83.1

0.75

0.8

78.9

33.6

Minor 5ss

44.7

-0.6

3.2

64.8

46.5

Minor BPS

0.36

1.5

69.08

38.5

Associated Gene:

Gene:

GAD1

Ensembl Gene ID:

ENSAPLG00000005082

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005303

24458368 - 24476445

18078