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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24476592_24478210_F

Intron Information:

Intron Rank:
142489
Intron Class:
major
Intron Phase:
Intron Coordinates:
24476592 - 24478210
Intron Length:
1619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGGCT
5'SS Class:
major
3'SS Sequence:
TCACCCTCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CTTCTCTCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
65.5
38.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
76.8
0.6
0.8
73.4
31.3
Minor 5ss
37.3
-1.4
3.7
56.2
48.2
Minor BPS
49.3
-0
1.9
63.43
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026776
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025361
24476466 - 24479116
2651