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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24502690_24504270_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24502690 - 24504270
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CAAACATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TCTTCTTCAAAC
Flanking Amino Acid:
FIVSINGSRLNKDNDTLKDL
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
66.7
0.38
1
57.8
41.7
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
62.4
0.37
1.6
71.74
39.5

Associated Gene:

Gene:
GORASP2
Ensembl Gene ID:
ENSAPLG00000004733
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004912
24502660 - 24510286
7627