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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24504976_24505484_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24504976 - 24505484
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTACA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CATTCGTTATTA
Flanking Amino Acid:
IIGADTVMNESEDLFSLIET
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.8
78.5
30.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
89.5
0.89
0.7
84.7
29.6
Minor 5ss
36.7
-1.5
2.5
43
44
Minor BPS
49
-0
2.3
63.96
43

Associated Gene:

Gene:
GORASP2
Ensembl Gene ID:
ENSAPLG00000004733
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004912
24502660 - 24510286
7627
ENSAPLT00000027060
24504271 - 24510454
6184