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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24536083_24536369_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24536083 - 24536369
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTGTGCTTATTT
Flanking Amino Acid:
IFFQCLYGRKPFGHNQSQQD
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.5
0.75
0.8
80.5
36.7
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
52
0.14
2.1
71.02
46.6

Associated Gene:

Gene:
TLK1
Ensembl Gene ID:
ENSAPLG00000004352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004553
24532592 - 24573066
40475