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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24539050_24540128_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24539050 - 24540128
Intron Length:
1079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AGTGAAACAACT
Flanking Amino Acid:
PPIIHYDLKPGNILLVDGTA
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
78.6
0.71
1
78.6
31
Major PPT
73.8
0.54
0.8
72.8
32
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
39.9
-0.6
2.1
59.34
42.8

Associated Gene:

Gene:
TLK1
Ensembl Gene ID:
ENSAPLG00000004352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004553
24532592 - 24573066
40475