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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24540299_24541080_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24540299 - 24541080
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTACGTACA
5'SS Class:
major
3'SS Sequence:
AATTCTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTCTCTAAATT
Flanking Amino Acid:
LYDYFSLDTDTFCTVLEYCE
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
71.8
39.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64.1
0.32
0.9
55.4
40.4
Minor 5ss
36.3
-1.5
2.9
42.3
37.7
Minor BPS
61
0.42
1.7
76.4
40.9

Associated Gene:

Gene:
TLK1
Ensembl Gene ID:
ENSAPLG00000004352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004553
24532592 - 24573066
40475