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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24541171_24541256_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24541171 - 24541256
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CATCTTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTAATGTATCC
Flanking Amino Acid:
WRDEKKENYHKHACREYRIH
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
87
27.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79.5
0.66
0.8
77.4
30.9
Minor 5ss
42.7
-0.8
3
60.1
38.5
Minor BPS
42.6
-0.5
2.3
58.25
40.6

Associated Gene:

Gene:
TLK1
Ensembl Gene ID:
ENSAPLG00000004352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004553
24532592 - 24573066
40475