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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24541711_24545674_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24541711 - 24545674
Intron Length:
3964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTACCTTAAACA
Flanking Amino Acid:
LKRINNEDNSQFKDHPTLNE
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
63.6
35.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.9
0.76
0.9
83.4
32
Minor 5ss
32.9
-1.9
3.4
47.3
42.5
Minor BPS
57.5
0.23
1.7
66.5
39.6

Associated Gene:

Gene:
TLK1
Ensembl Gene ID:
ENSAPLG00000004352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004553
24532592 - 24573066
40475