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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24549427_24556698_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24549427 - 24556698
Intron Length:
7272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAA
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
DPFVRPNLPQLLTLAEYHEQ
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
77.4
33.6
Major BPS
50.5
0.01
1.1
47.7
35.7
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
46.7
-0.3
2.8
68.1
42.7
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
TLK1
Ensembl Gene ID:
ENSAPLG00000004352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004553
24532592 - 24573066
40475