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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24558232_24559723_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24558232 - 24559723
Intron Length:
1492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TATTACTAAATA
Flanking Amino Acid:
SMSKKLLIEKSTQEKLASRE
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
61
0.34
1.8
73.57
38.2

Associated Gene:

Gene:
TLK1
Ensembl Gene ID:
ENSAPLG00000004352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004553
24532592 - 24573066
40475