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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24562147_24563268_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24562147 - 24563268
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TCATGCATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATATCTAAAAA
Flanking Amino Acid:
PQNSHSAPSSVRQNSPSPTS
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
72.1
40.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
72.7
0.51
1
62.7
42.8
Minor 5ss
46.7
-0.3
2.8
68.2
42.5
Minor BPS
53.1
0.09
1.8
66.34
39.6

Associated Gene:

Gene:
TLK1
Ensembl Gene ID:
ENSAPLG00000004352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004553
24532592 - 24573066
40475