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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24563356_24563803_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24563356 - 24563803
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
AAAAGCTTGACT
Flanking Amino Acid:
RGHKISDYFEYQGGNGSSPV
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
84.1
0.77
0.7
81.6
29.7
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
52.8
0.17
1.9
68.11
42.3

Associated Gene:

Gene:
TLK1
Ensembl Gene ID:
ENSAPLG00000004352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004553
24532592 - 24573066
40475