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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24563851_24567209_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24563851 - 24567209
Intron Length:
3359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTAA
5'SS Class:
strong_major
3'SS Sequence:
GCATTTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTATAAATAATA
Flanking Amino Acid:
KADTQSESSQGKSIGGRGHK
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
33.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76
0.59
1
72.7
42.1
Minor 5ss
42.5
-0.8
3
55.3
48.9
Minor BPS
49
-0
2
67.97
37.7

Associated Gene:

Gene:
TLK1
Ensembl Gene ID:
ENSAPLG00000004352
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004553
24532592 - 24573066
40475