Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24571169_24572922_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24571169 - 24572922

Intron Length:

1754

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTGGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

GTGTATGTAATA

Flanking Amino Acid:

STGSCSVGAKASTNNESSNH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.9

84.2

27.2

Major BPS

74.5

0.61

79.6

29.1

Major PPT

82.3

0.73

0.9

81.4

30.6

Minor 5ss

44.5

-0.6

2.8

38.4

Minor BPS

47.4

-0.2

2.1

60.46

40.2

Associated Gene:

Gene:

TLK1

Ensembl Gene ID:

ENSAPLG00000004352

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004553

24532592 - 24573066

40475