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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24630814_24631144_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24630814 - 24631144
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTCCTGACA
Flanking Amino Acid:
FASGAVELVKSHSSYNSAWC
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
76.6
0.6
1
73
37.5
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
62.5
0.39
1.7
74.62
36.9

Associated Gene:

Gene:
METTL8
Ensembl Gene ID:
ENSAPLG00000004140
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028393
24621531 - 24649023
27493
ENSAPLT00000022331
24625603 - 24649631
24029
ENSAPLT00000004255
24625603 - 24649631
24029