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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24631209_24633740_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24631209 - 24633740
Intron Length:
2532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AATTTTTTAACT
Flanking Amino Acid:
NSVFPILKVICNTPGTFLYC
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
76.2
39
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83
0.74
0.8
77.1
37.1
Minor 5ss
43.7
-0.7
2.6
56.9
42.5
Minor BPS
79.4
1
1
87.09
31.7

Associated Gene:

Gene:
METTL8
Ensembl Gene ID:
ENSAPLG00000004140
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028393
24621531 - 24649023
27493
ENSAPLT00000022331
24625603 - 24649631
24029
ENSAPLT00000004255
24625603 - 24649631
24029