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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24640010_24642256_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24640010 - 24642256
Intron Length:
2247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGATGT
5'SS Class:
major
3'SS Sequence:
TACCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
AGTTCTTCAATT
Flanking Amino Acid:
DPSKVFEHNMWDHMQWSQEE
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
70.3
36.4
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
85
0.79
0.8
80.1
31.5
Minor 5ss
34.4
-1.8
3.2
44.3
45.4
Minor BPS
66.8
0.61
1.5
79.47
36.6

Associated Gene:

Gene:
METTL8
Ensembl Gene ID:
ENSAPLG00000004140
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028393
24621531 - 24649023
27493
ENSAPLT00000022331
24625603 - 24649631
24029
ENSAPLT00000004255
24625603 - 24649631
24029