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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24649799_24650926_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24649799 - 24650926
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGCG
5'SS Class:
major
3'SS Sequence:
TTGTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TTGTTACCAACT
Flanking Amino Acid:
MGLLRSLVCQGSTTFKNVWT
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
55
41.5
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
87.1
0.83
0.7
85.1
29.7
Minor 5ss
33.7
-1.9
3.8
47.1
48.5
Minor BPS
47.9
-0
2.1
74.03
42.4

Associated Gene:

Gene:
DCAF17
Ensembl Gene ID:
ENSAPLG00000003935
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004046
24649652 - 24667631
17980