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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24651031_24652424_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24651031 - 24652424
Intron Length:
1394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATAAAATGAACT
Flanking Amino Acid:
YLDNYQCCISSIAQEPRILY
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.5
0.73
0.8
73.9
36.5
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
47.5
-0.1
1.9
68.24
41.2

Associated Gene:

Gene:
DCAF17
Ensembl Gene ID:
ENSAPLG00000003935
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004046
24649652 - 24667631
17980