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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24658530_24662107_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24658530 - 24662107
Intron Length:
3578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
CCAATATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGGTCTTAACG
Flanking Amino Acid:
FGLPCNIKITDTPPLLFEAS
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
72.6
0.51
1
65.4
39.8
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
65.5
0.35
1.5
64.94
43.2

Associated Gene:

Gene:
DCAF17
Ensembl Gene ID:
ENSAPLG00000003935
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004046
24649652 - 24667631
17980